PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G098400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 219aa    MW: 22229.9 Da    PI: 6.0639
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G098400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        +C+ +++ e+   C  ++  lC+ C ++ H+       H++v 
  Sevir.3G098400.1.p  4 VCDACGRAEAAVLCCADEAALCRRCDVAVHSAnrlagrHSRVA 46
                        8*****************************6577888888775 PP

2zf-B_box23.61.1e-0770106437
            zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg...H 37 
                         + C+ ++ek   +fC +++ llC+ C ++ H     H
  Sevir.3G098400.1.p  70 PACDICQEKTGYFFCLEDRALLCRPCDVAVHTAggaH 106
                         67****************************9546673 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.125147IPR000315B-box-type zinc finger
PfamPF006436.6E-6346IPR000315B-box-type zinc finger
CDDcd000214.81E-6347No hitNo description
SMARTSM003366.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.07267115IPR000315B-box-type zinc finger
SMARTSM003362.4E-967115IPR000315B-box-type zinc finger
CDDcd000211.67E-770115No hitNo description
PfamPF006436.9E-670106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKIVCDACGR AEAAVLCCAD EAALCRRCDV AVHSANRLAG RHSRVALLPS TTTTGPSPDL  60
AVDGTGSHHP ACDICQEKTG YFFCLEDRAL LCRPCDVAVH TAGGAHVASH RRFLITGVRI  120
GGGVECHNVP GVDAAAGVVS PSTSSGNGSS SAPSGGNPWS MPDKERRPSS SVGAAAAREG  180
LGDQQWPWSE FLADDAGLGM ELCCPAGLSE PGSSSLTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960780.11e-155PREDICTED: B-box zinc finger protein 20
SwissprotQ9SYM21e-40BBX22_ARATH; B-box zinc finger protein 22
TrEMBLK3ZD761e-155K3ZD76_SETIT; Uncharacterized protein
STRINGSi024510m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.13e-35DBB family protein